PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002124-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 197aa    MW: 20805.1 Da    PI: 6.6804
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002124-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.48.6e-5824119297
                  NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                            reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplkvyl++
  SMil_00002124-RA_Salv  24 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQR 111
                            89************************************************************************************** PP

                  NF-YB  90 yrelegek 97 
                            +r+legek
  SMil_00002124-RA_Salv 112 FRDLEGEK 119
                            ******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.2E-5421129IPR009072Histone-fold
SuperFamilySSF471133.26E-4026129IPR009072Histone-fold
PfamPF008085.6E-282993IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-205775No hitNo description
PROSITE patternPS0068506076IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-207694No hitNo description
PRINTSPR006151.1E-2095113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
LMADSDNESG GHREHNSYHE LSPREQDRFL PIANVSRIMK KALPANAKIS KDAKETVQEC  60
VSEFISFITG EASDKCQREK RKTINGDDLL WAMTTLGFED YVEPLKVYLQ RFRDLEGEKT  120
AMAGRGEKES GGNGAGVVSM GSGGGGGYEG MYGMNVMSHQ GGGAVYGYGQ VAGGGKLGSG  180
YHIGSGSGGG GGGSRPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B4e-4821114194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-4821114194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095535.13e-98PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233109e-76NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A022R1752e-88A0A022R175_ERYGU; Uncharacterized protein
STRINGVIT_19s0015g00440.t012e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.18e-77nuclear factor Y, subunit B3